similarity {diceR}R Documentation

Similarity Matrices

Description

cts computes the connected triple based similarity matrix, srs computes the simrank based similarity matrix, and asrs computes the approximated simrank based similarity matrix.

Usage

cts(E, dc)

srs(E, dc, R)

asrs(E, dc)

Arguments

E

an N by M matrix of cluster ensembles

dc

decay factor, ranges from 0 to 1 inclusive

R

number of iterations for srs

Value

an N by N CTS, SRS, or ASRS matrix

Author(s)

Johnson Liu, Derek Chiu

References

MATLAB functions cts, srs, asrs in package LinkCluE by Simon Garrett

Examples

set.seed(1)
E <- matrix(rep(sample(1:4, 800, replace = TRUE)), nrow = 100)
CTS <- cts(E = E, dc = 0.8)
SRS <- srs(E = E, dc = 0.8, R = 3)
ASRS <- asrs(E = E, dc = 0.8)
purrr::walk(list(CTS, SRS, ASRS), str)
[Package diceR version 1.0.3 Index]