RNA Seq analysis
Data
QC-plots
Volcano-plot
Enrichments
MDS-plot
Heatmap
More
Export data
Select data
Set names
Set colours
Upload experiment RData file
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Select factor to rename
No data loaded
Select experimental metadata
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Expression-plot
XY-plot
MA-plot
Sample heatmap
Boxplots
Density-plot
Format
Download
Select gene by
Gene(s) to plot
Color by
Split By
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure
Format
Download
Group samples by
X-axis
Y-axis
Highlight Sublist
Contrasts
FDR cutoff
logFC cutoff
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure
Format
Download
Contrasts
FDR cutoff
logFC cutoff
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure
Format
Download
Apply changes
X-axis text size
Y-axis text size
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure
Format
Download
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure
Format
Download
Color by
No. of samples
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure
Format
Download figure
Download table
Choose which contrast to visualize
Select FDR threshold
Select LogFC threshold
LogFC negative limits (smallest LogFC number shown)
LogFC positive limits (biggest LogFC number shown)
LogFC line style
solid
dashed
dotted
dotdash
longdash
twodash
Color significant genes
Color non-significant genes
Select border line size
Border color
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure
File Name
Download DE genes
Download all genes
Format
Download
Analysis Type
Enrichment Term
Enrichment direction
Up-Down
All
Top 'n' GO terms to plot
Adjusted p-value for functional test
Parameter for dot size
GeneRatio
ES
NES
Max. GO term character number
Select/Deselect all contrast
or choose contrast manually
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure
Format
Download
Chose the colour pattern
Chose first dimension
1
2
3
Chose second dimension
1
2
3
Add sample names
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure
Format
Download
Metadata clusters:
Distance measure
correlation
euclidean
Cluster algorithm
complete
ward.D2
Select/Deselect all contrasts
or choose contrast(s) manually
Height [cm]
Width [cm]
Output format
pdf
png
RData
tiff
powerpoint
File Name
Save Figure