DeCODER
Data
QC-plots
MDS-plot
Expression-plot
Volcano-plot
Heatmap
Enrichment
Select data
Set names
Set colours
Export data
Select DeCODER Input Data
Provide your own
DeCODER Sample #1
Upload DeCODER RDS file
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Load Sample Input File
Download Sample Input File
Select factor to rename
No data loaded
Select experimental metadata
No data loaded
Select table
DEG
Metadata
Gene Information
Counts
CPM
CPM (log2)
Enrichment
Export format
MS-Excel
csv (comma-seperated)
txt (tab-seperated)
File name
Download
Preview:
Boxplots
Density-plot
XY-plot
Format
Download
Color by
Sort by group color
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Click or draw a rectangle on data points to see details in table below
Click '+' sign on table to see summary statistics
Format
Download
Color by
Group by
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Click or draw a rectangle on data points to see details in table below
Click '+' sign on table to see summary statistics
Format
Download
Group samples by
X-axis
Y-axis
Highlight significant
Contrasts
FDR cutoff
logFC cutoff
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Click or draw a rectangle on data points to see details in table below
Click '+' sign on table to see details
Format
Download
Choose the colour pattern
Choose first dimension
1
2
3
Choose second dimension
1
2
3
Add sample names
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Click or draw a rectangle on data points to see details in table below
Click '+' sign on table to see MDS dimensions
Format
Download
Select gene by
Gene(s) to plot
Color by
Split by
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Click or draw a rectangle on data points to see details in table below
Click '+' sign on table to see details
Volcano-plot
MA-plot
Format
Download
Contrast
FDR cutoff
|logFC| cutoff
X-axis range
Symmetric x-axis
Y-axis range
Show points out of range
logFC line style
solid
dashed
dotted
dotdash
longdash
twodash
Color significant genes
Color non-significant genes
Select gene by
Gene(s) to label
Gene label color
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Click or draw a rectangle on data points to see details in table below
Click '+' sign on table to see summary statistics
Format
Download
Contrast
FDR cutoff
|logFC| cutoff
logFC line style
solid
dashed
dotted
dotdash
longdash
twodash
Color significant genes
Color non-significant genes
Select gene by
Gene(s) to label
Gene label color
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Click or draw a rectangle on data points to see details in table below
Click '+' sign on table to see summary statistics
Gene-heatmap
Sample-heatmap
Format
Download
Distance measure
euclidean
correlation
maximum
manhattan
canberra
minkowski
geodesic
chord
divergence
dtw
podani
Cluster algorithm
ward.D2
complete
average
single
mcquitty
median
centroid
FDR cutoff
|logFC| cutoff
Cut tree (genes)
Cut tree (samples)
Transpose matrix
Select/Deselect all contrasts
or choose contrast(s) manually
Color intervals
Color of maximum value
Color of middle value
Color of minimum value
Show sample names
Show gene names
Show gene by
Show metadata annotation
Sort sample by
Font size (base)
Font size (x-axis)
Font size (y-axis)
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Format
Download
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Format
Download
Analysis type
Database
Enrichment direction
Up-Down
All
Top 'n' terms to plot
FDR
Dot size
GeneRatio
ES
NES
Abbreviate term (max. character)
Select/Deselect all contrast
or choose contrast manually
Output format
pdf
png
RDS
tiff
PowerPoint
File Name
Save Figure
Click or draw a rectangle on data points to see details in table below
Click '+' sign on table to see genes